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Peptide record

TPDB09381

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09381
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
VVGRVASKVVPSLIGLFTTK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C96H167N25O25
NDCEQHMWY
V
2071.53
11.64
3
0
10
+3
-0.18
1.000
136.00
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
4
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
0
Q
2
G
0
H
1
I
2
L
2
K
0
M
1
F
1
P
2
S
2
T
0
W
0
Y
5
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 2 K: 2 M: 0 F: 1 P: 1 S: 2 T: 2 W: 0 Y: 0 V: 5
Chemical Descriptors
20 reviewed residue count
C96H167N25O25 sequence-only estimate (linear, free termini)
2071.53 sequence-only estimate (linear, free termini)
11.64 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
-0.18 sequence-only estimate (linear, free termini)
1.000 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA