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Peptide record

TPDB09369

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09369
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
VDKGRYLEAPTPPRPIYNRN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C105H166N32O30
CQHMFSW
P
2356.67
10.07
4
2
6
+2
3.27
-1.360
58.50
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
2980
1.26
5
Residue Composition
number
1
A
3
R
2
N
1
D
0
C
1
E
0
Q
1
G
0
H
1
I
1
L
1
K
0
M
0
F
4
P
0
S
1
T
0
W
2
Y
1
V
Amino Acid Distribution
A: 1 R: 3 N: 2 D: 1 C: 0 E: 1 Q: 0 G: 1 H: 0 I: 1 L: 1 K: 1 M: 0 F: 0 P: 4 S: 0 T: 1 W: 0 Y: 2 V: 1
Chemical Descriptors
20 reviewed residue count
C105H166N32O30 sequence-only estimate (linear, free termini)
2356.67 sequence-only estimate (linear, free termini)
10.07 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
3.27 sequence-only estimate (linear, free termini)
-1.360 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA