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Peptide record

TPDB09346

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09346
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
QEKDRTFAGFLLKGFGTSAS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C97H150N26O30
NCHIMPWYV
GF
2160.41
9.88
3
2
7
+1
1.69
-0.370
49.00
Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour
0
0.00
5
Residue Composition
number
2
A
1
R
0
N
1
D
0
C
1
E
1
Q
3
G
0
H
0
I
2
L
2
K
0
M
3
F
0
P
2
S
2
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 1 C: 0 E: 1 Q: 1 G: 3 H: 0 I: 0 L: 2 K: 2 M: 0 F: 3 P: 0 S: 2 T: 2 W: 0 Y: 0 V: 0
Chemical Descriptors
20 reviewed residue count
C97H150N26O30 sequence-only estimate (linear, free termini)
2160.41 sequence-only estimate (linear, free termini)
9.88 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
1.69 sequence-only estimate (linear, free termini)
-0.370 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA