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Peptide record

TPDB09344

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09344
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
PVVGRVASKVFPAVIGLVKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C98H170N26O22
NDCEQHMTWY
V
2064.59
11.73
4
0
11
+4
-0.38
0.945
136.00
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
0
0.00
1
Residue Composition
number
2
A
1
R
0
N
0
D
0
C
0
E
0
Q
2
G
0
H
1
I
1
L
3
K
0
M
1
F
2
P
1
S
0
T
0
W
0
Y
6
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 1 K: 3 M: 0 F: 1 P: 2 S: 1 T: 0 W: 0 Y: 0 V: 6
Chemical Descriptors
20 reviewed residue count
C98H170N26O22 sequence-only estimate (linear, free termini)
2064.59 sequence-only estimate (linear, free termini)
11.73 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
-0.38 sequence-only estimate (linear, free termini)
0.945 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA