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Peptide record

TPDB09342

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09342
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
PSLLYKAKAVFCKPSAVAVF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C103H163N23O24S1
RNDEQGHIMTW
A
2139.63
10.07
3
0
12
+3
-0.64
0.885
102.50
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
1490
0.70
4
Residue Composition
number
4
A
0
R
0
N
0
D
1
C
0
E
0
Q
0
G
0
H
0
I
2
L
3
K
0
M
2
F
2
P
2
S
0
T
0
W
1
Y
3
V
Amino Acid Distribution
A: 4 R: 0 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 2 K: 3 M: 0 F: 2 P: 2 S: 2 T: 0 W: 0 Y: 1 V: 3
Chemical Descriptors
20 reviewed residue count
C103H163N23O24S1 sequence-only estimate (linear, free termini)
2139.63 sequence-only estimate (linear, free termini)
10.07 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
-0.64 sequence-only estimate (linear, free termini)
0.885 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA