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Peptide record

TPDB09313

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09313
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
FLGGLIKPVPAMICAVRKKC
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C98H170N26O21S3
NDEQHSTWY
K
2144.77
10.32
4
0
10
+4
-0.48
0.905
117.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
125
0.06
2
Residue Composition
number
2
A
1
R
0
N
0
D
2
C
0
E
0
Q
2
G
0
H
2
I
2
L
3
K
1
M
1
F
2
P
0
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 2 E: 0 Q: 0 G: 2 H: 0 I: 2 L: 2 K: 3 M: 1 F: 1 P: 2 S: 0 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
20 reviewed residue count
C98H170N26O21S3 sequence-only estimate (linear, free termini)
2144.77 sequence-only estimate (linear, free termini)
10.32 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
-0.48 sequence-only estimate (linear, free termini)
0.905 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.