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Peptide record

TPDB09243

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB09243
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
CPQTPRCTNYAEKGQCPPN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H135N27O29S3
DHILMFSWV
P
2107.36
8.01
2
1
2
+1
2.65
-1.374
5.26
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
1615
0.77
10
Residue Composition
number
1
A
1
R
2
N
0
D
3
C
1
E
2
Q
1
G
0
H
0
I
0
L
1
K
0
M
0
F
4
P
0
S
2
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 1 N: 2 D: 0 C: 3 E: 1 Q: 2 G: 1 H: 0 I: 0 L: 0 K: 1 M: 0 F: 0 P: 4 S: 0 T: 2 W: 0 Y: 1 V: 0
Chemical Descriptors
19 reviewed residue count
C86H135N27O29S3 sequence-only estimate (linear, free termini)
2107.36 sequence-only estimate (linear, free termini)
8.01 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
2.65 sequence-only estimate (linear, free termini)
-1.374 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.