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Peptide record

TPDB09239

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB09239
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
VDKPPYLPRPTPPRRIYNR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C107H171N33O26
ACEQGHMFSW
P
2335.74
11.28
5
1
5
+4
3.66
-1.542
56.32
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
2980
1.28
4
Residue Composition
number
0
A
4
R
1
N
1
D
0
C
0
E
0
Q
0
G
0
H
1
I
1
L
1
K
0
M
0
F
6
P
0
S
1
T
0
W
2
Y
1
V
Amino Acid Distribution
A: 0 R: 4 N: 1 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 1 K: 1 M: 0 F: 0 P: 6 S: 0 T: 1 W: 0 Y: 2 V: 1
Chemical Descriptors
19 reviewed residue count
C107H171N33O26 sequence-only estimate (linear, free termini)
2335.74 sequence-only estimate (linear, free termini)
11.28 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
3.66 sequence-only estimate (linear, free termini)
-1.542 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA