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Peptide record

TPDB09230

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB09230
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
SCLRIGMRGRELMGGVGKT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C82H149N29O24S3
ANDQHFPWY
G
2021.44
11.23
4
1
6
+3
1.77
-0.095
76.84
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
3
Residue Composition
number
0
A
3
R
0
N
0
D
1
C
1
E
0
Q
5
G
0
H
1
I
2
L
1
K
2
M
0
F
0
P
1
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 1 E: 1 Q: 0 G: 5 H: 0 I: 1 L: 2 K: 1 M: 2 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
19 reviewed residue count
C82H149N29O24S3 sequence-only estimate (linear, free termini)
2021.44 sequence-only estimate (linear, free termini)
11.23 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.77 sequence-only estimate (linear, free termini)
-0.095 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.