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Peptide record

TPDB09222

Antibacterial standard
19 amino acids
Basic Information
3D PDB MODEL
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TPDB09222
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 19-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
KYYSRVRGGRSAVLSSLDK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C93H156N30O28
NCEQHIMFPTW
S
2142.45
10.79
5
1
7
+4
2.99
-0.716
76.84
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
2980
1.39
6
Residue Composition
number
1
A
3
R
0
N
1
D
0
C
0
E
0
Q
2
G
0
H
0
I
2
L
2
K
0
M
0
F
0
P
4
S
0
T
0
W
2
Y
2
V
Amino Acid Distribution
A: 1 R: 3 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 2 K: 2 M: 0 F: 0 P: 0 S: 4 T: 0 W: 0 Y: 2 V: 2
Chemical Descriptors
19 reviewed residue count
C93H156N30O28 sequence-only estimate (linear, free termini)
2142.45 sequence-only estimate (linear, free termini)
10.79 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
2.99 sequence-only estimate (linear, free termini)
-0.716 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.