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Peptide record

TPDB09009

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB09009
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
ETFAKKALKALEKLLKKG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C94H166N24O24
RNDCQHIMPSWYV
K
2016.50
10.54
6
2
8
+4
1.14
-0.450
103.33
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
0
0.00
1
Residue Composition
number
3
A
0
R
0
N
0
D
0
C
2
E
0
Q
1
G
0
H
0
I
4
L
6
K
0
M
1
F
0
P
0
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 3 R: 0 N: 0 D: 0 C: 0 E: 2 Q: 0 G: 1 H: 0 I: 0 L: 4 K: 6 M: 0 F: 1 P: 0 S: 0 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
18 reviewed residue count
C94H166N24O24 sequence-only estimate (linear, free termini)
2016.50 sequence-only estimate (linear, free termini)
10.54 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.14 sequence-only estimate (linear, free termini)
-0.450 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.