Back to search

Peptide record

TPDB09003

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB09003
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
ELAKKALKALKKALKSAR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C89H167N27O22
NDCQGHIMFPTWYV
K
1967.47
11.19
7
1
9
+6
1.65
-0.444
114.44
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
0
0.00
1
Residue Composition
number
5
A
1
R
0
N
0
D
0
C
1
E
0
Q
0
G
0
H
0
I
4
L
6
K
0
M
0
F
0
P
1
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 5 R: 1 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 0 H: 0 I: 0 L: 4 K: 6 M: 0 F: 0 P: 0 S: 1 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
18 reviewed residue count
C89H167N27O22 sequence-only estimate (linear, free termini)
1967.47 sequence-only estimate (linear, free termini)
11.19 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
1.65 sequence-only estimate (linear, free termini)
-0.444 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.