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Peptide record

TPDB09002

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB09002
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
AASKALRTASRLARSLLT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C80H148N28O24
NDCEQGHIMFPWYV
A
1886.23
12.71
4
0
9
+4
2.05
0.167
114.44
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
5
Residue Composition
number
5
A
3
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
4
L
1
K
0
M
0
F
0
P
3
S
2
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 5 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 4 K: 1 M: 0 F: 0 P: 0 S: 3 T: 2 W: 0 Y: 0 V: 0
Chemical Descriptors
18 reviewed residue count
C80H148N28O24 sequence-only estimate (linear, free termini)
1886.23 sequence-only estimate (linear, free termini)
12.71 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
2.05 sequence-only estimate (linear, free termini)
0.167 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.