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Peptide record

TPDB09000

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB09000
Antibacterial
Anti-infective peptides
AntiBP3
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3, with an available 3D structural model.
Sequence
GNNRPVYIPKPRPPHPRI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C96H154N32O22
ADCEQLMFSTW
P
2108.48
12.12
5
0
4
+4
2.98
-1.428
59.44
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.71
3
Residue Composition
number
0
A
3
R
2
N
0
D
0
C
0
E
0
Q
1
G
1
H
2
I
0
L
1
K
0
M
0
F
6
P
0
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 3 N: 2 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 1 I: 2 L: 0 K: 1 M: 0 F: 0 P: 6 S: 0 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
18 reviewed residue count
C96H154N32O22 sequence-only estimate (linear, free termini)
2108.48 sequence-only estimate (linear, free termini)
12.12 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
2.98 sequence-only estimate (linear, free termini)
-1.428 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA