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Peptide record

TPDB08838

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB08838
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GNNRPVYIAQPRPPHPAL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C90H141N29O23
DCEKMFSTW
P
1997.29
11.16
3
0
6
+2
1.95
-0.906
70.56
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.75
4
Residue Composition
number
2
A
2
R
2
N
0
D
0
C
0
E
1
Q
1
G
1
H
1
I
1
L
0
K
0
M
0
F
5
P
0
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 2 R: 2 N: 2 D: 0 C: 0 E: 0 Q: 1 G: 1 H: 1 I: 1 L: 1 K: 0 M: 0 F: 0 P: 5 S: 0 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
18 reviewed residue count
C90H141N29O23 sequence-only estimate (linear, free termini)
1997.29 sequence-only estimate (linear, free termini)
11.16 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.95 sequence-only estimate (linear, free termini)
-0.906 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA