Back to search

Peptide record

TPDB08749

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB08749
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
RVRRPVYIPQPRPPHPRL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C102H168N36O21
ANDCEGKMFSTW
P
2234.68
12.58
6
0
5
+5
3.72
-1.300
75.56
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1490
0.67
2
Residue Composition
number
0
A
5
R
0
N
0
D
0
C
0
E
1
Q
0
G
1
H
1
I
1
L
0
K
0
M
0
F
6
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 5 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 1 I: 1 L: 1 K: 0 M: 0 F: 0 P: 6 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C102H168N36O21 sequence-only estimate (linear, free termini)
2234.68 sequence-only estimate (linear, free termini)
12.58 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.72 sequence-only estimate (linear, free termini)
-1.300 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA