Back to search

Peptide record

TPDB08655

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB08655
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GGHIRRIIRKIIHIIKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C94H171N33O18
ANDCEQLMFPSTWYV
I
2051.60
12.71
8
0
7
+6
2.02
-0.053
160.59
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
0
A
3
R
0
N
0
D
0
C
0
E
0
Q
2
G
2
H
7
I
0
L
3
K
0
M
0
F
0
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 2 I: 7 L: 0 K: 3 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C94H171N33O18 sequence-only estimate (linear, free termini)
2051.60 sequence-only estimate (linear, free termini)
12.71 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
2.02 sequence-only estimate (linear, free termini)
-0.053 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA