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Peptide record

TPDB08522

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB08522
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
LQKYYWRVRGGRWAVLS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C101H152N30O22
NDCEHIMFPT
R
2138.51
11.35
4
0
9
+4
1.96
-0.535
85.88
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
13980
6.54
4
Residue Composition
number
1
A
3
R
0
N
0
D
0
C
0
E
1
Q
2
G
0
H
0
I
2
L
1
K
0
M
0
F
0
P
1
S
0
T
2
W
2
Y
2
V
Amino Acid Distribution
A: 1 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 2 H: 0 I: 0 L: 2 K: 1 M: 0 F: 0 P: 0 S: 1 T: 0 W: 2 Y: 2 V: 2
Chemical Descriptors
17 reviewed residue count
C101H152N30O22 sequence-only estimate (linear, free termini)
2138.51 sequence-only estimate (linear, free termini)
11.35 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.96 sequence-only estimate (linear, free termini)
-0.535 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA