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Peptide record

TPDB08363

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB08363
Antibacterial
Anti-infective peptides
AntiBP3
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from AntiBP3, with an available 3D structural model.
Sequence
EATKCFQWQRNMRKVR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C89H145N31O23S2
DGHILPSY
R
2081.44
11.37
5
1
5
+4
4.26
-1.481
24.38
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
5500
2.64
5
Residue Composition
number
1
A
3
R
1
N
0
D
1
C
1
E
2
Q
0
G
0
H
0
I
0
L
2
K
1
M
1
F
0
P
0
S
1
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 3 N: 1 D: 0 C: 1 E: 1 Q: 2 G: 0 H: 0 I: 0 L: 0 K: 2 M: 1 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 1
Chemical Descriptors
16 reviewed residue count
C89H145N31O23S2 sequence-only estimate (linear, free termini)
2081.44 sequence-only estimate (linear, free termini)
11.37 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
4.26 sequence-only estimate (linear, free termini)
-1.481 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA