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Peptide record

TPDB08361

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB08361
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
KKLGAPSITCVRRAFA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C76H132N24O19S1
NDEQHMWY
A
1718.09
11.47
4
0
7
+4
1.40
0.181
85.62
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
0
0.00
3
Residue Composition
number
3
A
2
R
0
N
0
D
1
C
0
E
0
Q
1
G
0
H
1
I
1
L
2
K
0
M
1
F
1
P
1
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 3 R: 2 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 1 K: 2 M: 0 F: 1 P: 1 S: 1 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
16 reviewed residue count
C76H132N24O19S1 sequence-only estimate (linear, free termini)
1718.09 sequence-only estimate (linear, free termini)
11.47 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.40 sequence-only estimate (linear, free termini)
0.181 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.