Back to search

Peptide record

TPDB08106

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB08106
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
VSSKYLSKVKVKAGK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C74H132N20O20
RNDCEQHIMFPTW
K
1621.98
10.77
5
0
6
+5
1.22
-0.360
90.67
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
1490
0.92
4
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
1
L
5
K
0
M
0
F
0
P
3
S
0
T
0
W
1
Y
3
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 5 M: 0 F: 0 P: 0 S: 3 T: 0 W: 0 Y: 1 V: 3
Chemical Descriptors
15 reviewed residue count
C74H132N20O20 sequence-only estimate (linear, free termini)
1621.98 sequence-only estimate (linear, free termini)
10.77 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.22 sequence-only estimate (linear, free termini)
-0.360 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.