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Peptide record

TPDB08105

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB08105
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
VSSKYLSKALVKAGR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C72H127N21O20
NDCEQHIMFPTW
KS
1606.93
10.91
4
0
7
+4
1.30
-0.047
104.00
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
1490
0.93
4
Residue Composition
number
2
A
1
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
2
L
3
K
0
M
0
F
0
P
3
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 2 K: 3 M: 0 F: 0 P: 0 S: 3 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
15 reviewed residue count
C72H127N21O20 sequence-only estimate (linear, free termini)
1606.93 sequence-only estimate (linear, free termini)
10.91 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.30 sequence-only estimate (linear, free termini)
-0.047 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.