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Peptide record

TPDB08086

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB08086
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and dbAMP, with an available 3D structural model.
Sequence
EKCLRWQWEMRKYGG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C88H132N26O22S2
ANDHIFPSTV
REGKW
1970.30
9.68
4
2
5
+2
3.01
-1.533
26.00
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
12490
6.34
3
Residue Composition
number
0
A
2
R
0
N
0
D
1
C
2
E
1
Q
2
G
0
H
0
I
1
L
2
K
1
M
0
F
0
P
0
S
0
T
2
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 2 N: 0 D: 0 C: 1 E: 2 Q: 1 G: 2 H: 0 I: 0 L: 1 K: 2 M: 1 F: 0 P: 0 S: 0 T: 0 W: 2 Y: 1 V: 0
Chemical Descriptors
15 reviewed residue count
C88H132N26O22S2 sequence-only estimate (linear, free termini)
1970.30 sequence-only estimate (linear, free termini)
9.68 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
3.01 sequence-only estimate (linear, free termini)
-1.533 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.