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Peptide record

TPDB08080

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB08080
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
EAALKAALDLAAKLA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H117N17O20
RNCQGHIMFPSTWYV
A
1468.76
6.99
2
2
11
-0
-0.38
0.867
150.67
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
0
0.00
0
Residue Composition
number
7
A
0
R
0
N
1
D
0
C
1
E
0
Q
0
G
0
H
0
I
4
L
2
K
0
M
0
F
0
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 7 R: 0 N: 0 D: 1 C: 0 E: 1 Q: 0 G: 0 H: 0 I: 0 L: 4 K: 2 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
15 reviewed residue count
C66H117N17O20 sequence-only estimate (linear, free termini)
1468.76 sequence-only estimate (linear, free termini)
6.99 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
-0.38 sequence-only estimate (linear, free termini)
0.867 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.