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Peptide record

TPDB07996

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB07996
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP pep-lab Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
SKCRQWQWKIRRTNP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C87H139N31O21S1
ADEGHLMFYV
R
1987.32
12.13
5
0
3
+5
4.58
-1.980
26.00
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
11000
5.54
6
Residue Composition
number
0
A
3
R
1
N
0
D
1
C
0
E
2
Q
0
G
0
H
1
I
0
L
2
K
0
M
0
F
1
P
1
S
1
T
2
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 3 N: 1 D: 0 C: 1 E: 0 Q: 2 G: 0 H: 0 I: 1 L: 0 K: 2 M: 0 F: 0 P: 1 S: 1 T: 1 W: 2 Y: 0 V: 0
Chemical Descriptors
15 reviewed residue count
C87H139N31O21S1 sequence-only estimate (linear, free termini)
1987.32 sequence-only estimate (linear, free termini)
12.13 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
4.58 sequence-only estimate (linear, free termini)
-1.980 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.