Back to search

Peptide record

TPDB07950

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB07950
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GNDYLHKLTQRKSVK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C78H131N25O23
ACEIMFPW
K
1787.05
10.46
5
1
4
+3
3.23
-1.420
71.33
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.83
5
Residue Composition
number
0
A
1
R
1
N
1
D
0
C
0
E
1
Q
1
G
1
H
0
I
2
L
3
K
0
M
0
F
0
P
1
S
1
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 1 N: 1 D: 1 C: 0 E: 0 Q: 1 G: 1 H: 1 I: 0 L: 2 K: 3 M: 0 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 1 V: 1
Chemical Descriptors
15 reviewed residue count
C78H131N25O23 sequence-only estimate (linear, free termini)
1787.05 sequence-only estimate (linear, free termini)
10.46 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
3.23 sequence-only estimate (linear, free termini)
-1.420 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA