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Peptide record

TPDB07815

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB07815
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
SKCYQWQRRMRKLGA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C82H135N29O20S2
NDEHIFPTV
R
1911.28
11.41
5
0
5
+5
3.79
-1.447
32.67
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
6990
3.66
5
Residue Composition
number
1
A
3
R
0
N
0
D
1
C
0
E
2
Q
1
G
0
H
0
I
1
L
2
K
1
M
0
F
0
P
1
S
0
T
1
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 3 N: 0 D: 0 C: 1 E: 0 Q: 2 G: 1 H: 0 I: 0 L: 1 K: 2 M: 1 F: 0 P: 0 S: 1 T: 0 W: 1 Y: 1 V: 0
Chemical Descriptors
15 reviewed residue count
C82H135N29O20S2 sequence-only estimate (linear, free termini)
1911.28 sequence-only estimate (linear, free termini)
11.41 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.79 sequence-only estimate (linear, free termini)
-1.447 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.