Back to search

Peptide record

TPDB06654

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB06654
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
AAHCIALRKGYK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C59H99N19O14S1
NDEQMFPSTWV
A
1330.61
10.20
4
0
6
+3
1.11
-0.083
90.00
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
1490
1.12
2
Residue Composition
number
3
A
1
R
0
N
0
D
1
C
0
E
0
Q
1
G
1
H
1
I
1
L
2
K
0
M
0
F
0
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 3 R: 1 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 1 H: 1 I: 1 L: 1 K: 2 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
12 reviewed residue count
C59H99N19O14S1 sequence-only estimate (linear, free termini)
1330.61 sequence-only estimate (linear, free termini)
10.20 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.11 sequence-only estimate (linear, free termini)
-0.083 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA