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Peptide record

TPDB06076

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB06076
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
YQWQRRMRKL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C65H105N23O14S1
ANDCEGHIFPSTV
R
1464.75
12.12
4
0
4
+4
5.19
-2.090
39.00
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
6990
4.77
3
Residue Composition
number
0
A
3
R
0
N
0
D
0
C
0
E
2
Q
0
G
0
H
0
I
1
L
1
K
1
M
0
F
0
P
0
S
0
T
1
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 2 G: 0 H: 0 I: 0 L: 1 K: 1 M: 1 F: 0 P: 0 S: 0 T: 0 W: 1 Y: 1 V: 0
Chemical Descriptors
10 reviewed residue count
C65H105N23O14S1 sequence-only estimate (linear, free termini)
1464.75 sequence-only estimate (linear, free termini)
12.12 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
5.19 sequence-only estimate (linear, free termini)
-2.090 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.