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Peptide record

TPDB05961

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB05961
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
LYRRRFVVGR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C60H100N22O12
ANDCEQHIKMPSTW
R
1321.59
12.40
4
0
5
+4
4.29
-0.470
97.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
1490
1.13
1
Residue Composition
number
0
A
4
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
1
L
0
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 4 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 0 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
10 reviewed residue count
C60H100N22O12 sequence-only estimate (linear, free termini)
1321.59 sequence-only estimate (linear, free termini)
12.40 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
4.29 sequence-only estimate (linear, free termini)
-0.470 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.