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Peptide record

TPDB05959

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB05959
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
ESYFVFSVGM
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C55H76N10O16S1
ARNDCQHILKPTW
FSV
1165.33
3.29
0
1
6
-1
-0.36
0.910
58.00
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
1490
1.28
3
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
1
E
0
Q
1
G
0
H
0
I
0
L
0
K
1
M
2
F
0
P
2
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 1 H: 0 I: 0 L: 0 K: 0 M: 1 F: 2 P: 0 S: 2 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
10 reviewed residue count
C55H76N10O16S1 sequence-only estimate (linear, free termini)
1165.33 sequence-only estimate (linear, free termini)
3.29 sequence-only estimate (linear, free termini)
-1 sequence-only estimate (linear, free termini)
-0.36 sequence-only estimate (linear, free termini)
0.910 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.