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Peptide record

TPDB05914

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB05914
Antibacterial
Anti-infective peptides
AntiBP3
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from AntiBP3, with an available 3D structural model.
Sequence
TKCFQWQRN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C53H79N17O14S1
ADEGHILMPSYV
Q
1210.38
10.11
2
0
2
+2
3.80
-1.689
0.00
Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour
5500
4.54
5
Residue Composition
number
0
A
1
R
1
N
0
D
1
C
0
E
2
Q
0
G
0
H
0
I
0
L
1
K
0
M
1
F
0
P
0
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 1 D: 0 C: 1 E: 0 Q: 2 G: 0 H: 0 I: 0 L: 0 K: 1 M: 0 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
9 reviewed residue count
C53H79N17O14S1 sequence-only estimate (linear, free termini)
1210.38 sequence-only estimate (linear, free termini)
10.11 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
3.80 sequence-only estimate (linear, free termini)
-1.689 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA