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Peptide record

TPDB05908

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB05908
Antibacterial
Anti-infective peptides
AntiBP3
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from AntiBP3, with an available 3D structural model.
Sequence
FQWQRNMRK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C57H88N20O13S1
ADCEGHILPSTYV
RQ
1293.51
12.41
3
0
3
+3
5.05
-2.178
0.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
5500
4.25
3
Residue Composition
number
0
A
2
R
1
N
0
D
0
C
0
E
2
Q
0
G
0
H
0
I
0
L
1
K
1
M
1
F
0
P
0
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 2 N: 1 D: 0 C: 0 E: 0 Q: 2 G: 0 H: 0 I: 0 L: 0 K: 1 M: 1 F: 1 P: 0 S: 0 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
9 reviewed residue count
C57H88N20O13S1 sequence-only estimate (linear, free termini)
1293.51 sequence-only estimate (linear, free termini)
12.41 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
5.05 sequence-only estimate (linear, free termini)
-2.178 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA