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Peptide record

TPDB05669

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB05669
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
AVWKFVKRV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C56H89N15O10
NDCEQGHILMPSTY
V
1132.42
11.64
3
0
6
+3
0.75
0.444
107.78
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
5500
4.86
0
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
2
K
0
M
1
F
0
P
0
S
0
T
1
W
0
Y
3
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 2 M: 0 F: 1 P: 0 S: 0 T: 0 W: 1 Y: 0 V: 3
Chemical Descriptors
9 reviewed residue count
C56H89N15O10 sequence-only estimate (linear, free termini)
1132.42 sequence-only estimate (linear, free termini)
11.64 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.75 sequence-only estimate (linear, free termini)
0.444 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA