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Peptide record

TPDB05657

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB05657
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
WRRRRRRR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C53H96N30O9
ANDCEQGHILKMFPSTYV
R
1297.54
13.18
7
0
1
+7
12.76
-4.050
0.00
Mammalian: 2.8 hour Yeast: 3 min E.coli: 2 min
5500
4.24
0
Residue Composition
number
0
A
7
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
0
K
0
M
0
F
0
P
0
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 7 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
8 reviewed residue count
C53H96N30O9 sequence-only estimate (linear, free termini)
1297.54 sequence-only estimate (linear, free termini)
13.18 sequence-only estimate (linear, free termini)
+7 sequence-only estimate (linear, free termini)
12.76 sequence-only estimate (linear, free termini)
-4.050 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.