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Peptide record

TPDB05626

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB05626
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP Peptipedia
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.
Sequence
VAGRAQGM
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C31H56N12O10S1
NDCEHILKFPSTWY
AG
788.92
11.05
1
0
4
+1
1.07
0.112
61.25
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
1
Residue Composition
number
2
A
1
R
0
N
0
D
0
C
0
E
1
Q
2
G
0
H
0
I
0
L
0
K
1
M
0
F
0
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 2 H: 0 I: 0 L: 0 K: 0 M: 1 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
8 reviewed residue count
C31H56N12O10S1 sequence-only estimate (linear, free termini)
788.92 sequence-only estimate (linear, free termini)
11.05 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
1.07 sequence-only estimate (linear, free termini)
0.112 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.