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Peptide record

TPDB05364

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB05364
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
DAQEKRQPWLPFV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C75H112N20O20
NCGHIMSTY
QP
1613.84
7.01
2
2
5
+0
2.38
-1.069
60.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
5500
3.41
2
Residue Composition
number
1
A
1
R
0
N
1
D
0
C
1
E
2
Q
0
G
0
H
0
I
1
L
1
K
0
M
1
F
2
P
0
S
0
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 1 C: 0 E: 1 Q: 2 G: 0 H: 0 I: 0 L: 1 K: 1 M: 0 F: 1 P: 2 S: 0 T: 0 W: 1 Y: 0 V: 1
Chemical Descriptors
13 reviewed residue count
C75H112N20O20 sequence-only estimate (linear, free termini)
1613.84 sequence-only estimate (linear, free termini)
7.01 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
2.38 sequence-only estimate (linear, free termini)
-1.069 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA