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Peptide record

TPDB05294

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB05294
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
PAQPFRIKKRQGPFERP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C94H150N30O22
NDCHLMSTWYV
P
2052.41
12.13
5
1
4
+4
3.54
-1.571
28.82
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
0
0.00
2
Residue Composition
number
1
A
3
R
0
N
0
D
0
C
1
E
2
Q
1
G
0
H
1
I
0
L
2
K
0
M
2
F
4
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 3 N: 0 D: 0 C: 0 E: 1 Q: 2 G: 1 H: 0 I: 1 L: 0 K: 2 M: 0 F: 2 P: 4 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C94H150N30O22 sequence-only estimate (linear, free termini)
2052.41 sequence-only estimate (linear, free termini)
12.13 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
3.54 sequence-only estimate (linear, free termini)
-1.571 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.