TPDB

3D PDB MODEL

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TPDB ID TPDB05232

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 21-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from AntiBP3, Peptipedia, AI4AVP, and other sources, with an available 3D structural model.

Sequence

MPKTRRRPRRSQRKRPPTPWP

FASTA

>TPDB05232|Antibacterial;Antiviral|length=21
MPKTRRRPRRSQRKRPPTPWP

Formula C116H198N46O26S1

Absent Amino Acids ANDCEGHILFYV

Common Amino Acids R

Mass 2685.20

PI 13.18

Basic Residues 9

Acidic Residues 0

Hydrophobic Residues 2

Net Charge +9

Boman Index 9.26

Hydrophobicity -2.552

Aliphatic Index 0.00

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 204.83

Polar Residues 4

number

0

A

7

R

0

N

0

D

0

C

0

E

1

Q

0

G

0

H

0

I

0

L

2

K

1

M

0

F

6

P

1

S

2

T

1

W

0

Y

0

V

Amino Acid Distribution

A: 0 R: 7 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 0 L: 0 K: 2 M: 1 F: 0 P: 6 S: 1 T: 2 W: 1 Y: 0 V: 0

Length

21

Formula

C116H198N46O26S1

Mass

2685.20

PI

13.18

Net Charge

+9

Boman Index

9.26

Hydrophobicity

-2.552

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0