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Peptide record

TPDB05166

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB05166
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
GVGDIFRKIVSTIKNVV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C84H145N23O23
ACEQHLMPWY
V
1845.22
10.59
3
1
8
+2
0.68
0.676
137.06
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
3
Residue Composition
number
0
A
1
R
1
N
1
D
0
C
0
E
0
Q
2
G
0
H
3
I
0
L
2
K
0
M
1
F
0
P
1
S
1
T
0
W
0
Y
4
V
Amino Acid Distribution
A: 0 R: 1 N: 1 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 3 L: 0 K: 2 M: 0 F: 1 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 4
Chemical Descriptors
17 reviewed residue count
C84H145N23O23 sequence-only estimate (linear, free termini)
1845.22 sequence-only estimate (linear, free termini)
10.59 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
0.68 sequence-only estimate (linear, free termini)
0.676 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.