TPDB

3D PDB MODEL

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TPDB ID TPDB05022

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 35-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from AntiBP3, Peptipedia, AI4AVP, and other sources, with an available 3D structural model.

Sequence

FDASISQVNEKINQSLAFIRKSDELLHNVNAGKST

FASTA

>TPDB05022|Antibacterial;Antiviral|length=35
FDASISQVNEKINQSLAFIRKSDELLHNVNAGKST

Formula C168H273N49O56

Absent Amino Acids CMPWY

Common Amino Acids S

Mass 3875.31

PI 7.77

Basic Residues 5

Acidic Residues 4

Hydrophobic Residues 13

Net Charge +0

Boman Index 9.64

Hydrophobicity -0.434

Aliphatic Index 92.00

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 0

Absorbance 280nm 0.00

Polar Residues 12

number

3

A

1

R

4

N

2

D

0

C

2

E

2

Q

1

G

1

H

3

I

3

L

3

K

0

M

2

F

0

P

5

S

1

T

0

W

0

Y

2

V

Amino Acid Distribution

A: 3 R: 1 N: 4 D: 2 C: 0 E: 2 Q: 2 G: 1 H: 1 I: 3 L: 3 K: 3 M: 0 F: 2 P: 0 S: 5 T: 1 W: 0 Y: 0 V: 2

Length

35

Formula

C168H273N49O56

Mass

3875.31

PI

7.77

Net Charge

+0

Boman Index

9.64

Hydrophobicity

-0.434

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0