Back to search

Peptide record

TPDB04913

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB04913
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GFADLFGKAVDFIKS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C77H115N17O21
RNCEQHMPTWY
F
1614.86
6.87
2
2
8
-0
0.24
0.540
84.67
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
1
Residue Composition
number
2
A
0
R
0
N
2
D
0
C
0
E
0
Q
2
G
0
H
1
I
1
L
2
K
0
M
3
F
0
P
1
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 2 R: 0 N: 0 D: 2 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 1 K: 2 M: 0 F: 3 P: 0 S: 1 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
15 reviewed residue count
C77H115N17O21 sequence-only estimate (linear, free termini)
1614.86 sequence-only estimate (linear, free termini)
6.87 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
0.24 sequence-only estimate (linear, free termini)
0.540 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA