TPDB

3D PDB MODEL

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TPDB ID TPDB04851

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 dbAMP DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 32-aa standard natural antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.

Sequence

NSGGAAVVAALGCAAGGVKYGRLLGPWGAAIG

FASTA

>TPDB04851|Antibacterial|length=32
NSGGAAVVAALGCAAGGVKYGRLLGPWGAAIG

Formula C128H206N38O36S1

Absent Amino Acids DEQHMFT

Common Amino Acids G

Mass 2885.34

PI 9.77

Basic Residues 2

Acidic Residues 0

Hydrophobic Residues 17

Net Charge +2

Boman Index -3.28

Hydrophobicity 0.791

Aliphatic Index 100.94

Half Life

Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 242.26

Polar Residues 4

number

8

A

1

R

1

N

0

D

1

C

0

E

0

Q

9

G

0

H

1

I

3

L

1

K

0

M

0

F

1

P

1

S

0

T

1

W

1

Y

3

V

Amino Acid Distribution

A: 8 R: 1 N: 1 D: 0 C: 1 E: 0 Q: 0 G: 9 H: 0 I: 1 L: 3 K: 1 M: 0 F: 0 P: 1 S: 1 T: 0 W: 1 Y: 1 V: 3

Length

32

Formula

C128H206N38O36S1

Mass

2885.34

PI

9.77

Net Charge

+2

Boman Index

-3.28

Hydrophobicity

0.791

Evidence 1 Activity

Source & Reference

Database Source dbAMP DRAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.