Back to search

Peptide record

TPDB04800

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB04800
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
RKPRTTKPKPAPKQEPATEE
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C99H169N31O31
NDCGHILMFSWYV
P
2289.62
10.54
6
3
2
+3
4.10
-2.255
10.00
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
4
Residue Composition
number
2
A
2
R
0
N
0
D
0
C
3
E
1
Q
0
G
0
H
0
I
0
L
4
K
0
M
0
F
5
P
0
S
3
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 2 N: 0 D: 0 C: 0 E: 3 Q: 1 G: 0 H: 0 I: 0 L: 0 K: 4 M: 0 F: 0 P: 5 S: 0 T: 3 W: 0 Y: 0 V: 0
Chemical Descriptors
20 reviewed residue count
C99H169N31O31 sequence-only estimate (linear, free termini)
2289.62 sequence-only estimate (linear, free termini)
10.54 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
4.10 sequence-only estimate (linear, free termini)
-2.255 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA