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Peptide record

TPDB04799

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB04799
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
RPPGFYFEFRANIIPYLGRR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C118H173N33O26
DCQHKMSTWV
R
2469.88
11.12
4
1
9
+3
2.30
-0.510
63.50
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
2980
1.21
3
Residue Composition
number
1
A
4
R
1
N
0
D
0
C
1
E
0
Q
2
G
0
H
2
I
1
L
0
K
0
M
3
F
3
P
0
S
0
T
0
W
2
Y
0
V
Amino Acid Distribution
A: 1 R: 4 N: 1 D: 0 C: 0 E: 1 Q: 0 G: 2 H: 0 I: 2 L: 1 K: 0 M: 0 F: 3 P: 3 S: 0 T: 0 W: 0 Y: 2 V: 0
Chemical Descriptors
20 reviewed residue count
C118H173N33O26 sequence-only estimate (linear, free termini)
2469.88 sequence-only estimate (linear, free termini)
11.12 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
2.30 sequence-only estimate (linear, free termini)
-0.510 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA