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Peptide record

TPDB04796

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB04796
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
LSTFFRLFNGRRRRSVQWCA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C112H174N38O26S1
DEHIKMPY
R
2500.91
12.58
5
0
8
+5
3.35
-0.430
58.50
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
5500
2.20
6
Residue Composition
number
1
A
5
R
1
N
0
D
1
C
0
E
1
Q
1
G
0
H
0
I
2
L
0
K
0
M
3
F
0
P
2
S
1
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 5 N: 1 D: 0 C: 1 E: 0 Q: 1 G: 1 H: 0 I: 0 L: 2 K: 0 M: 0 F: 3 P: 0 S: 2 T: 1 W: 1 Y: 0 V: 1
Chemical Descriptors
20 reviewed residue count
C112H174N38O26S1 sequence-only estimate (linear, free termini)
2500.91 sequence-only estimate (linear, free termini)
12.58 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.35 sequence-only estimate (linear, free termini)
-0.430 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA