TPDB

3D PDB MODEL

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TPDB ID TPDB04607

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 39-aa standard natural antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.

Sequence

SNDSLWYGVGQFMGKQANCITNHPVKHMIIPGYCSKILG

FASTA

>TPDB04607|Antibacterial|length=39
SNDSLWYGVGQFMGKQANCITNHPVKHMIIPGYCSKILG

Formula C192H296N52O53S4

Absent Amino Acids RE

Common Amino Acids G

Mass 4309.02

PI 8.96

Basic Residues 5

Acidic Residues 1

Hydrophobic Residues 15

Net Charge +2

Boman Index 1.83

Hydrophobicity -0.090

Aliphatic Index 77.44

Half Life

Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8605

Absorbance 280nm 199.70

Polar Residues 13

number

1

A

0

R

3

N

1

D

2

C

0

E

2

Q

5

G

2

H

4

I

2

L

3

K

2

M

1

F

2

P

3

S

1

T

1

W

2

Y

2

V

Amino Acid Distribution

A: 1 R: 0 N: 3 D: 1 C: 2 E: 0 Q: 2 G: 5 H: 2 I: 4 L: 2 K: 3 M: 2 F: 1 P: 2 S: 3 T: 1 W: 1 Y: 2 V: 2

Length

39

Formula

C192H296N52O53S4

Mass

4309.02

PI

8.96

Net Charge

+2

Boman Index

1.83

Hydrophobicity

-0.090

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.