TPDB

3D PDB MODEL

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TPDB ID TPDB03549

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 41-aa standard natural antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.

Sequence

MTPLWRVMGNKPFGAYCQDHVECSTGICKGGHCIYSQPIKS

FASTA

>TPDB03549|Antibacterial|length=41
MTPLWRVMGNKPFGAYCQDHVECSTGICKGGHCIYSQPIKS

Formula C198H305N55O56S6

Absent Amino Acids

Common Amino Acids G

Mass 4544.29

PI 8.30

Basic Residues 6

Acidic Residues 2

Hydrophobic Residues 13

Net Charge +2

Boman Index 4.80

Hydrophobicity -0.246

Aliphatic Index 54.63

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8730

Absorbance 280nm 192.11

Polar Residues 14

number

1

A

1

R

1

N

1

D

4

C

1

E

2

Q

5

G

2

H

3

I

1

L

3

K

2

M

1

F

3

P

3

S

2

T

1

W

2

Y

2

V

Amino Acid Distribution

A: 1 R: 1 N: 1 D: 1 C: 4 E: 1 Q: 2 G: 5 H: 2 I: 3 L: 1 K: 3 M: 2 F: 1 P: 3 S: 3 T: 2 W: 1 Y: 2 V: 2

Length

41

Formula

C198H305N55O56S6

Mass

4544.29

PI

8.30

Net Charge

+2

Boman Index

4.80

Hydrophobicity

-0.246

Evidence 1 Activity

Source & Reference

Database Source NA