TPDB

3D PDB MODEL

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TPDB ID TPDB03424

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 dbAMP DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.

Sequence

GLWNTKLEAGLLFAMGKLDLKRCLKAGGC

FASTA

>TPDB03424|Antibacterial|length=29
GLWNTKLEAGLLFAMGKLDLKRCLKAGGC

Formula C139H232N38O36S3

Absent Amino Acids QHIPSYV

Common Amino Acids L

Mass 3107.78

PI 9.71

Basic Residues 5

Acidic Residues 2

Hydrophobic Residues 13

Net Charge +3

Boman Index 0.51

Hydrophobicity 0.259

Aliphatic Index 104.48

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5625

Absorbance 280nm 181.00

Polar Residues 4

number

3

A

1

R

1

N

1

D

2

C

1

E

0

Q

5

G

0

H

0

I

7

L

4

K

1

M

1

F

0

P

0

S

1

T

1

W

0

Y

0

V

Amino Acid Distribution

A: 3 R: 1 N: 1 D: 1 C: 2 E: 1 Q: 0 G: 5 H: 0 I: 0 L: 7 K: 4 M: 1 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 0 V: 0

Length

29

Formula

C139H232N38O36S3

Mass

3107.78

PI

9.71

Net Charge

+3

Boman Index

0.51

Hydrophobicity

0.259

Evidence 1 Activity

Source & Reference

Database Source dbAMP DRAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.